dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03439
Location and strand information: 88199 - 89428 (-)
Family: 2.A.42.2.5
Protein type: TC
Protein description: Inner membrane transport protein YqeG

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03440
Location and strand information: 89547 - 90008 (-)
Family: 2.A.117.1.3
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03441
Location and strand information: 90115 - 90990 (+)
Family: HTH_1
Protein type: TF
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03442
Location and strand information: 91071 - 91598 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03443
Location and strand information: 91613 - 92389 (-)
Family: 3.A.1.3.29
Protein type: TC
Protein description: Lysine/arginine/ornithine-binding periplasmic protein

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03444
Location and strand information: 92404 - 93582 (-)
Family: null
Protein type: null
Protein description: Hippurate hydrolase

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03445
Location and strand information: 93808 - 94986 (+)
Family: null
Protein type: null
Protein description: Acetyl-CoA acetyltransferase

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03446
Location and strand information: 95315 - 95998 (+)
Family: 1.B.35.1.5
Protein type: TC
Protein description: Oligogalacturonate-specific porin KdgM

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03447
Location and strand information: 96143 - 97318 (-)
Family: PL22|PL22_1
Protein type: CAZyme
Protein description: Oligogalacturonate lyase
Protein isoelectric point: 5.2661
Protein molecular weight: 44303.46
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03448
Location and strand information: 97774 - 98610 (+)
Family: null
Protein type: null
Protein description: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03449
Location and strand information: 98673 - 99434 (+)
Family: null
Protein type: null
Protein description: 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03450
Location and strand information: 99747 - 101162 (+)
Family: 2.A.1.1.2
Protein type: TC
Protein description: Arabinose-proton symporter

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03451
Location and strand information: 101243 - 102370 (-)
Family: PL22|PL22_1
Protein type: CAZyme
Protein description: Oligogalacturonate lyase
Protein isoelectric point: 5.6856
Protein molecular weight: 43157.23
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03452
Location and strand information: 102437 - 103726 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Putative ABC transporter substrate-binding protein YesO

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03453
Location and strand information: 103740 - 104867 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Trehalose import ATP-binding protein SugC

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03454
Location and strand information: 104880 - 105782 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000003187_13|CGC3
Gene ID: MGYG000003187_03455
Location and strand information: 105775 - 106665 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Lactose transport system permease protein LacF

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000003187_03447	PL22_e0\|4.2.2.6	pectin
MGYG000003187_03451	PL22_e0\|4.2.2.6	pectin

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000003187_03439	Inner membrane transport protein YqeG	TC	88199	89428	-	2.A.42.2.5
MGYG000003187_03440	hypothetical protein	TC	89547	90008	-	2.A.117.1.3
MGYG000003187_03441	hypothetical protein	TF	90115	90990	+	HTH_1
MGYG000003187_03442	hypothetical protein	null	91071	91598	+	Cupin_2
MGYG000003187_03443	Lysine/arginine/ornithine-binding periplasmic protein	TC	91613	92389	-	3.A.1.3.29
MGYG000003187_03444	Hippurate hydrolase	null	92404	93582	-	Peptidase_M20\| M20_dimer
MGYG000003187_03445	Acetyl-CoA acetyltransferase	null	93808	94986	+	Thiolase_N\| Thiolase_C
MGYG000003187_03446	Oligogalacturonate-specific porin KdgM	TC	95315	95998	+	1.B.35.1.5
MGYG000003187_03447	Oligogalacturonate lyase	CAZyme	96143	97318	-	PL22\| PL22_1
MGYG000003187_03448	4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase	null	97774	98610	+	KduI
MGYG000003187_03449	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase	null	98673	99434	+	adh_short_C2
MGYG000003187_03450	Arabinose-proton symporter	TC	99747	101162	+	2.A.1.1.2
MGYG000003187_03451	Oligogalacturonate lyase	CAZyme	101243	102370	-	PL22\| PL22_1
MGYG000003187_03452	Putative ABC transporter substrate-binding protein YesO	TC	102437	103726	-	3.A.1.1.11
MGYG000003187_03453	Trehalose import ATP-binding protein SugC	TC	103740	104867	-	3.A.1.1.11
MGYG000003187_03454	L-arabinose transport system permease protein AraQ	TC	104880	105782	-	3.A.1.1.11
MGYG000003187_03455	Lactose transport system permease protein LacF	TC	105775	106665	-	3.A.1.1.11
Protein ID	Protein Name	Type	Start	End	Strand	Signature